Feel free to use the following tools and downloads that we have organized help simplify everything from sample shipment to data analysis. Continue reading

1. Publications

Enrichment of intersubtype HIV-1 recombinants in a dual infection system using HIV-1 strain-specific siRNAs

Yong Gao, Measho Abreha, Kenneth N Nelson, Heather Baird, Dawn M Dudley, Awet Abraha, Eric J Arts Retrovirology. 2011; 8: 5. Published online 2011 January 13. doi: 10.1186/1742-4690-8-5 PMCID: PMC3025951

Hormonal contraceptive use and HIV disease progression among women in Uganda and Zimbabwe

Charles S. Morrison, Pai-Lien Chen, Immaculate Nankya, Anne Rinaldi, Barbara Van Der Pol, Yun-Rong Ma, Tsungai Chipato, Roy Mugerwa, Megan Dunbar, Eric Arts, Robert A. Salata J Acquir Immune Defic Syndr. Author manuscript; available in PMC 2012 June 1. Published in final edited form as: J Acquir Immune Defic Syndr. 2011 June 1; 57(2): 157–164.

CCR5- and CXCR4-Tropic Subtype C Human Immunodeficiency Virus Type 1 Isolates Have a Lower Level of Pathogenic Fitness than Other Dominant Group M Subtypes: Implications for the Epidemic
Awet Abraha, Immaculate L. Nankya, Richard Gibson, Korey Demers, Denis M. Tebit, Elizabeth Johnston, David Katzenstein, Asna Siddiqui, Carolina Herrera, Lucia Fischetti, Robin J. Shattock, Eric J. Arts
J Virol. 2009 June; 83(11): 5592–5605. Published online 2009 March 18. doi: 10.1128/JVI.02051-08 PMCID: PMC2681953

The Challenge of HIV-1 Antiretroviral Resistance in Africa in the Era of HAART
Hakim Sendagire, Philippa J. Easterbrook, Immaculate Nankya, Eric Arts, David Thomas, Steven J. Reynolds
AIDS Rev. Author manuscript; available in PMC 2012 August 6.
Published in final edited form as: AIDS Rev. 2009 Apr-Jun; 11(2): 59–70. PMCID: PMC3412282

Targets of Small Interfering RNA Restriction during Human Immunodeficiency Virus Type 1 Replication
Yong Gao, Michael A. Lobritz, Justin Roth, Measho Abreha, Kenneth N. Nelson, Immaculate Nankya, Dawn M. Moore-Dudley, Awet Abraha, Stanton L. Gerson, Eric J. Arts
J Virol. 2008 March; 82(6): 2938–2951. Published online 2008 January 16. doi: 10.1128/JVI.02126-07 PMCID: PMC2259002

2. Downloadable genomic programs/software

Tablet - Next Generation Sequence Assembly Visualization – is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. File format support for ACE, AFG, MAQ, SOAP2, SAM and BAM. Import GFF3 features and quickly find/highlight/display them. Search and locate reads by name across entire data sets. Entire-contig overviews, showing data layout or coverage information.